Journal of Pharma and Drug Innovation

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Design, Synthesis, and Antibacterial Evaluation of Novel Scaffold Pyrimidine Derivatives: A Structure-Activity Relationship Study
Research Article - Volume: 1, Issue: 1, 2026 (June)

Santanu Kumar Hotta1*, Krishna Chandra Panda2, Asish Kumar Mohanty1, Kanhu Charan Bisoyi1, Pratibha Pradeep Pal1, Smruti Suman Mahapatra1

1*Department of Pharmaceutical Chemistry, College of Pharmaceutical Sciences s, Berhampur-760002, Odisha
2Department of Pharmaceutical Chemistry, Roland Institute of Pharmaceutical Sciences, Berhampur-760010, Odisha

*Correspondence to: Santanu Kumar Hotta, College of Pharmaceutical Sciences s, Berhampur-760002, Odisha, India; Email:

Received: May 13, 2026; Manuscript No: JPDI-26-4840; Editor Assigned: May 16, 2026; PreQc No: JPDI-26-4840 (PQ); Reviewed: June 08, 2026; Revised: June 09, 2026; Manuscript No: JPDI-26-4840 (R); Published: June 26, 2026

ABSTRACT

Background:

The rapid escalation of antimicrobial resistance (AMR) represents a critical threat to global public health, with drug-resistant infections projected to cause over 10 million deaths annually by 2050. There is an urgent need for the development of novel chemical entities that can bypass existing resistance mechanisms. N2, N4-Pyrimidine-2,4-diamines represent a privileged scaffold in medicinal chemistry due to their diverse biological activities and ease of structural modification.

Methods:

In this study, a series of novel N2, N4-pyrimidine-2,4-diamine derivatives were designed and synthesized using a systematic structure-activity relationship (SAR) approach. The synthesis was achieved through a robust multi-step protocol involving cyclization followed by regioselective N-alkylation. The chemical structures of the synthesized compounds were rigorously characterized using Fourier-transform infrared spectroscopy (FT-IR), and structural derivatization of potent compound.

Results:

The synthetic methodology afforded the target derivatives in high yields ranging from 75% to 93%. In vitro antibacterial evaluation was conducted against representative Gram-positive (Staphylococcus aureus) and Gram-negative (Escherichia coli) pathogens. Among the library, compound C5, characterized by a 3-nitrophenyl substitution at the pyrimidine core, emerged as the most potent lead. C5 exhibited minimum inhibitory concentrations (MIC) comparable to the reference fluoroquinolone antibiotic, Ciprofloxacin.

Conclusion:

The SAR data suggests that the electronic nature of the phenyl ring substituents significantly influences antibacterial efficacy. These results validate the N2, N4-substituted pyrimidine-2,4- diamine framework as a promising template for the development of next-generation antibacterial agents to combat the growing crisis of AMR.

Keywords: Pyrimidine, Antibacterial agents, Structure-Activity Relationship (SAR), AMR.


Citation: Kumar Hotta S, Chandra Panda K, Kumar Mohanty A, Charan Bisoyi K, Pradeep Pal P, Suman Mahapatra S (2026). Design, Synthesis, and Antibacterial Evaluation of Novel Scaffold Pyrimidine Derivatives: A Structure-Activity Relationship Study. J. Pharma Drug Innov. Vol.1 Iss.1, June (2026), pp:22-34.
Copyright: © 2026 Santanu Kumar Hotta, Krishna Chandra Panda, Asish Kumar Mohanty, Kanhu Charan Bisoyi, Pratibha Pradeep Pal, Smruti Suman Mahapatra. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.